• PDB 3MXW | dpdb_rx0jmcodCrystal structure Sonic hedgehog bound to the 5E1 fab fragmentUpdated Oct 22, 2026
• PDB 4WVJ | dpdb_oraspm3hCrystal structure of the Type-I signal peptidase from Staphylococcus aureus (SpsB) in complex with an inhibitor peptide (pep3).Updated Oct 22, 2026
• PDB 3FDO | dpdb_nkehtorgStructure of human MDMX in complex with high affinity peptideUpdated Oct 22, 2026
• PDB 4X1P | dpdb_i58yyiteThe crystal structure of mupain-1-17 in complex with murinised human uPA at pH4.6Updated Oct 22, 2026
• PDB 5EQ0 | dpdb_451msqq5Crystal Structure of chromodomain of CBX8 in complex with inhibitor UNC3866Updated Oct 22, 2026
• PDB 6IE6 | dpdb_jt9bc94kCrystal structure of ADCP1 tandem Agenet domain 3-4 in complex with H3K9me2Updated Oct 22, 2026
• PDB 5TDC | dpdb_8upfumhaCrystal structure of the human UBR-box domain from UBR1 in complex with monomethylated arginine peptide.Updated Oct 22, 2026
• PDB 4NMR | dpdb_56aok8vbCFTR Associated Ligand (CAL) PDZ domain bound to peptide iCAL36(Ac-K-5) (ANSR[Ac-K]PTSII)Updated Oct 22, 2026
• PDB 4MNY | dpdb_rzsga77tCrystal structure of urokinase-type plasminogen activator (uPA) complexed with bicyclic peptide UK903Updated Oct 22, 2026
• PDB 4C2G | dpdb_hra9x29kCrystal structure of CtpB(S309A) in complex with a peptide having a Val-Pro-Ala C-terminusUpdated Oct 22, 2026
• PDB 3GSU | dpdb_mvo4vkzcCrystal structure of the binary complex between HLA-A2 and HCMV NLV-M5T peptide variantUpdated Oct 22, 2026
• PDB 1RUP | dpdb_d6uc447fCrystal structure (G) of native cationic cyclization antibody 4C6 fab at pH 8.5 with a data set collected at APS beamline 19-IDUpdated Oct 22, 2026
• PDB 6OBE | dpdb_ysizsza7Ricin A chain bound to VHH antibody V6H8Updated Oct 22, 2026
• PDB 4NMO | dpdb_a2szemtkCFTR Associated Ligand (CAL) PDZ domain bound to peptide iCAL36(Ac-K-1)(ANSRWPTS[Ac-K]I)Updated Oct 22, 2026
• PDB 7Q9S | dpdb_uosh5uxhCrystal structure of PDE6D KRas peptide complex with Compound-1Updated Oct 22, 2026
• PDB 6PLH | dpdb_c8yw66qiFAB fragment complexed with C-mannosylated tryptophan peptideUpdated Oct 22, 2026
• PDB 7Z8O | dpdb_frdycnbcCrystal structure of SARS-CoV-2 S RBD in complex with a stapled peptideUpdated Oct 22, 2026
• PDB 5I1N | dpdb_hq474er6Villin headpiece subdomain with a Gln26 to beta-3-homoglutamine substitutionUpdated Oct 22, 2026
• PDB 3C9Q | dpdb_h454o93hCrystal structure of the uncharacterized human protein C8orf32 with bound peptideUpdated Oct 22, 2026
• PDB 6OBG | dpdb_cdqqed4dRicin A chain bound to VHH antibody V8E6Updated Oct 22, 2026
• PDB 6S5P | dpdb_sd7tdofaCfucosylated peptide SBL2 bound to Fucose binding Lectin LecB (PA-IIL) from Pseudomonas aeruginosa at 1.46 Angstrom resolutionUpdated Oct 22, 2026
• PDB 4JMG | dpdb_72q41gacCrystal structure of the synthetic protein in complex with pY peptideUpdated Oct 22, 2026
• PDB 5VWD | dpdb_1zd2wd8yHLA-B*57:03 presenting LTVQVARVWUpdated Oct 22, 2026
• PDB 1N0W | dpdb_87t7jgc0Crystal structure of a RAD51-BRCA2 BRC repeat complexUpdated Oct 22, 2026
• PDB 3AVL | dpdb_fbouc9awCrystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding siteUpdated Oct 22, 2026
• PDB 7RAQ | dpdb_qbx0ezimCrystal structure of CV3-25 Fab bound to SARS-CoV-2 spike stem helix peptideUpdated Oct 22, 2026
• PDB 1V9T | dpdb_lnaluqqfStructure of E. coli cyclophilin B K163T mutant bound to succinyl-ALA-PRO-ALA-P-nitroanilideUpdated Oct 22, 2026
• PDB 6YH0 | dpdb_wxxk50k5Marasmius oreades agglutinin (MOA) in complex with the truncated PVPRAHS synthetic substrateUpdated Oct 22, 2026
• PDB 5E0Q | dpdb_4ml8izjzCrystal structure of the Nup98 C-terminal domain bound to nanobody TP377Updated Oct 22, 2026
• PDB 8F12 | dpdb_q6gycn1bStructure of the MDM2 P53 binding domain in complex with H103, an all-D Helicon PolypeptideUpdated Oct 22, 2026
• PDB 4J46 | dpdb_lqipiidqCrystal structure of XIAP-BIR2 domain with AVPI boundUpdated Oct 22, 2026
• PDB 4PUA | dpdb_e7wlbr9cCrystal Structure Of glutathione transferase YghU from Streptococcus pneumoniae ATCC 700669, complexed with glutathione, Target EFI-507284Updated Oct 22, 2026
• PDB 6IZC | dpdb_nrt54ghkCrystal structure of the chromosome-encoded beta-lactamase of Vibrio parahaemolyticusUpdated Oct 22, 2026
• PDB 6LR7 | dpdb_z7bjhm0rCrystal structure of GFPuv complexed with the nanobody LaG16 at 1.67 Angstron resolutionUpdated Oct 22, 2026
• PDB 3G3P | dpdb_xhldv9rsThe structure of the M53A Mutant of the Caulobacter crescentus CLPS in complex with a peptide containing an amino-terminal norleucine residueUpdated Oct 22, 2026
• PDB 6CBZ | dpdb_3s1qdsanEstrogen Receptor Alpha Ligand Binding Domain Y537S Mutant in Complex with Estradiol and GRIP PeptideUpdated Oct 22, 2026
• PDB 3OVE | dpdb_j2cbi1k7Crystal Structure of the Grb2 SH2 Domain in Complex with a pYXN-Derived TripeptideUpdated Oct 22, 2026
• PDB 3SND | dpdb_hovg4vpkCrystal structure of SARS coronavirus main protease complexed with Ac-ESTLQ-H (cocrystallization)Updated Oct 22, 2026
• PDB 5EN2 | dpdb_yszaiuc7Molecular basis for antibody-mediated neutralization of New World hemorrhagic fever mammarenavirusesUpdated Oct 22, 2026
• PDB 6AX4 | dpdb_1pfxq1tnPlk-1 polo-box domain in complex with histidine N(tau)-cyclized Macrocycle 5b.Updated Oct 22, 2026
• PDB 7S2S | dpdb_cpyc76qunanobody bound to Interleukin-2RbetaUpdated Oct 22, 2026
• PDB 7Q8J | dpdb_nkg37cx7Peptide IILKEK in complex with human cathepsin V C25S mutantUpdated Oct 22, 2026
• PDB 6DQU | dpdb_ic14jdvhCrystal structure of Haemophilus influenzae OppA complex with GIINTLUpdated Oct 22, 2026
• PDB 7NX0 | dpdb_3g2zlpqtLTK:ALKAL1 complex stabilized by a NanobodyUpdated Oct 22, 2026
• PDB 6R8I | dpdb_3jomu7ggPP4R3A EVH1 domain bound to FxxP motifUpdated Oct 22, 2026
• PDB 8DTT | dpdb_c3b1i0soCrystal structure of SARS-CoV-2 spike stem helix peptide in complex with neutralizing antibody COV93-03Updated Oct 22, 2026
• PDB 1Z9N | dpdb_onmo1jw8X-Ray structure of a Cu-Zn superoxide dismutase from Haemophilus ducreyi with haem bound at the dimer interfaceUpdated Oct 22, 2026
• PDB 4EZY | dpdb_9kpl220uCrystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide NRLILTGUpdated Oct 22, 2026
• PDB 7OK6 | dpdb_sjf6c38jCrystal structure of UNC119B in complex with LCK peptideUpdated Oct 22, 2026
• PDB 5WGD | dpdb_d7z63khxEstrogen Receptor Alpha Ligand Binding Domain in Complex with Estradiol and SRC2-LP1Updated Oct 22, 2026