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Ensemble refinement model

PDB 5WVO|dpdb_3tsp1ubd

Ensemble refinement model

Crystal structure of DNMT1 RFTS domain in complex with K18/K23 mono-ubiquitylated histone H3

Program
PHENIX phenix.ensemble_refinement
Model type
Ensemble
Purpose
Refinement
Atoms
226,082
Residues
403
Protein chains
4
Alternate-location fraction
0%
Ligand
ZN

Evaluations

R-work
0.164
R-free
0.206
Clashscore
—

Macromolecules

The same in every model of this entry.

Entity 1
MoleculeChainsLengthOrganismUniProtDetails
Ubiquitin76
  • MutationG76C
Entity 2
MoleculeChainsLengthOrganismUniProtDetails
DNA (cytosine-5)-methyltransferase 1250
  • ConstructRFTS domain, UNP residues 351-600
Entity 3
MoleculeChainsLengthOrganismUniProtDetails
Histone H3.137
  • ConstructUNP residues 2-37
  • MutationsK18C K23C

Data

L0 Raw
L1 Processed
L2 Models
L3 Evaluations