Ensemble refinement model

PDB 3P6Z|dpdb_4bd1mf3b

Ensemble refinement model

Structural basis of thrombin mediated factor V activation: essential role of the hirudin-like sequence Glu666-Glu672 for processing at the heavy chain-B domain junction

Program: PHENIX 1.21.2_5419
Model type: Ensemble
Purpose: Refinement
Atoms: 346,658

Residues: 584
Protein chains: 6
Alternate-location fraction: 0%
Ligands: 0G6, CL, MPD, NA, NAG

Evaluations

R-work

0.185

R-free

0.221

Clashscore

—

Macromolecules

The same in every model of this entry.

Entity 1
Molecule	Chains	Length	Organism	UniProt	Details
Thrombin light chain		36	Homo sapiens9606	P00734SIFTS · 2026_03	ConstructTHROMBIN LIGHT CHAIN

Entity 2
Molecule	Chains	Length	Organism	UniProt	Details
Thrombin heavy chain		259	Homo sapiens9606	P00734SIFTS · 2026_03	ConstructTHROMBIN HEAVY CHAIN

Entity 3
Molecule	Chains	Length	Organism	UniProt	Details
Coagulation factor V		71	Homo sapiens9606	P12259SIFTS · 2026_03	ConstructFACTOR V, A2-B DOMAIN LINKER

Data

L0 Raw

L1 Processed

L2 Models

L3 Evaluations