Ensemble refinement model

PDB 7N5C|dpdb_7tivy5kc

Ensemble refinement model

6218 TCR in complex with H2Db PA with an engineered TCR-pMHC disulfide bond

Program: PHENIX 1.21.2_5419
Model type: Ensemble
Purpose: Refinement
Atoms: 348,623

Residues: 818
Protein chains: 5
Alternate-location fraction: 0%
Ligand: NA

Evaluations

R-work

0.171

R-free

0.210

Clashscore

—

Macromolecules

The same in every model of this entry.

Entity 1
Molecule	Chains	Length	Organism	UniProt	Details
H-2 class I histocompatibility antigen, D-B alpha chain		277	Mus musculus10090	P01899SIFTS · 2026_03	—

Entity 2
Molecule	Chains	Length	Organism	UniProt	Details
Beta-2-microglobulin		100	Homo sapiens9606	P61769SIFTS · 2026_03	—

Entity 3
Molecule	Chains	Length	Organism	UniProt	Details
peptide from Polymerase acidic protein		10	Influenza A virus11320	O89752SIFTS · 2026_03	MutationE4C

Entity 4
Molecule	Chains	Length	Organism	UniProt	Details
Fusion protein of T cell receptor alpha variable 21-DV12 with T-cell receptor, sp3.4 alpha chain		204	Homo sapiens9606 Mus musculus10090	A0A075B6C4SIFTS · 2026_03 K7N5N2SIFTS · 2026_03	MutationS110C

Entity 5
Molecule	Chains	Length	Organism	UniProt	Details
Fusion protein of T cell receptor beta, variable 29 and Human nkt tcr beta chain		240	Homo sapiens9606 Mus musculus10090	A0A0G2LB96SIFTS · 2026_03 K7N5M4SIFTS · 2026_03	—

Data

L0 Raw

L1 Processed

L2 Models

L3 Evaluations