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Rerefined model

PDB 5D1L|dpdb_aa2rcc0o

Rerefined model

Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7 (Y165A)

Program
PHENIX 2.0_5824
Model type
Multiconformer
Purpose
Refinement
Atoms
2,678
Residues
257
Protein chains
2
Alternate-location fraction
11.67%
Ligands
OXL, PEG, ZN

Evaluations

R-work
0.165
R-free
0.198
Clashscore
5.0

Macromolecules

The same in every model of this entry.

Entity 1
MoleculeChainsLengthOrganismUniProtDetails
Ubiquitin-conjugating enzyme E2 D2147—
Entity 2
MoleculeChainsLengthOrganismUniProtDetails
E3 ubiquitin-protein ligase RNF25133
  • ConstructUNP residues 126-258
  • MutationY165A

Data

L0 Raw
L1 Processed
L2 Models
L3 Evaluations