Ensemble refinement model

PDB 5M00|dpdb_bqhjzbe2

Ensemble refinement model

Crystal structure of murine P14 TCR complex with H-2Db and Y4A, modified gp33 peptide from LCMV

Program: PHENIX phenix.ensemble_refinement
Model type: Ensemble
Purpose: Refinement
Atoms: 462,776

Residues: 810
Protein chains: 5
Alternate-location fraction: 0%

Evaluations

R-work

0.185

R-free

0.229

Clashscore

—

Macromolecules

The same in every model of this entry.

Entity 1
Molecule	Chains	Length	Organism	UniProt	Details
H-2 class I histocompatibility antigen, D-B alpha chain		276	Mus musculus10090	P01899SIFTS · 2026_03	—

Entity 2
Molecule	Chains	Length	Organism	UniProt	Details
Beta-2-microglobulin		119	Mus musculus10090	P01887SIFTS · 2026_03	—

Entity 3
Molecule	Chains	Length	Organism	UniProt	Details
Protein Trav14-1,Uncharacterized protein		205	Mus musculus10090 Mus musculus10090	A0A0G2JF94SIFTS · 2026_03 Q6PIR9SIFTS · 2026_03	—

Entity 4
Molecule	Chains	Length	Organism	UniProt	Details
T-cell receptor beta chain V region C5,Uncharacterized protein		238	Mus musculus10090 Mus musculus10090	P04213SIFTS · 2026_03 Q7TND8SIFTS · 2026_03	—

Entity 5
Molecule	Chains	Length	Organism	UniProt	Details
LCMV-DERIVED GP33 ALTERED PEPTIDE LIGAND Y4A		9	Mus musculus10090	—	—

Data

L0 Raw

L1 Processed

L2 Models

L3 Evaluations