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Ensemble refinement model

PDB 7Y8J|dpdb_f0geu6ed

Ensemble refinement model

3D1 in complex with 6-mer HR1 peptide from SARS-CoV-2

Program
PHENIX 1.21.2_5419
Model type
Ensemble
Purpose
Refinement
Atoms
200,240
Residues
242
Protein chains
3
Alternate-location fraction
0%
Ligand
PCA

Evaluations

R-work
0.138
R-free
0.158
Clashscore
—

Macromolecules

The same in every model of this entry.

Entity 1
MoleculeChainsLengthOrganismUniProtDetails
heavy chain of 3D1122——
Entity 2
MoleculeChainsLengthOrganismUniProtDetails
Spike protein S2'7
  • Severe acute respiratory syndrome coronavirus 22697049
  • ConstructHR1 domain
Entity 3
MoleculeChainsLengthOrganismUniProtDetails
light chain of 3D1114——

Data

L0 Raw
L1 Processed
L2 Models
L3 Evaluations