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Ensemble refinement model

PDB 4DIH|dpdb_f3khpgd7

Ensemble refinement model

X-ray structure of the complex between human alpha thrombin and thrombin binding aptamer in the presence of sodium ions

Program
PHENIX 1.21.2_5419
Model type
Ensemble
Purpose
Refinement
Atoms
136,412
Residues
291
Protein chains
3
Alternate-location fraction
0%
Ligands
0G6, CL, NA, NAG, ZN

Evaluations

R-work
0.157
R-free
0.188
Clashscore
—

Macromolecules

The same in every model of this entry.

Entity 1
MoleculeChainsLengthOrganismUniProtDetails
Prothrombin36
  • ConstructLight chain fragment (UNP Residues 328-363)
Entity 2
MoleculeChainsLengthOrganismUniProtDetails
Prothrombin259
  • ConstructHeavy chain fragment (UNP Residues 364-622)
Entity 3
MoleculeChainsLengthOrganismUniProtDetails
Thrombin binding aptamer15——

Data

L0 Raw
L1 Processed
L2 Models
L3 Evaluations