Dynamic PDB
Log in

Rerefined model

PDB 5YGD|dpdb_fiw8duqe

Rerefined model

Crystal structure of Drosophila melanogaster Papi extended Tudor domain (D287A) in complex with Piwi N-terminal R10me2s peptide

Program
PHENIX 2.0_5824
Model type
Multiconformer
Purpose
Refinement
Atoms
2,036
Residues
220
Protein chains
2
Alternate-location fraction
0.91%
Ligand
2MR

Evaluations

R-work
0.199
R-free
0.234
Clashscore
6.2

Macromolecules

The same in every model of this entry.

Entity 1
MoleculeChainsLengthOrganismUniProtDetails
GH18329p223
  • Drosophila melanogaster7227
  • ConstructUNP residues 259-479
  • MutationD287A
Entity 2
MoleculeChainsLengthOrganismUniProtDetails
ASP-GLN-GLY-ARG-GLY-ARG-2MR-ARG-PRO-LEU-ASN11
  • Drosophila melanogaster7227
—

Data

L0 Raw
L1 Processed
L2 Models
L3 Evaluations