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Rerefined model

PDB 2NY1|dpdb_guaq05qh

Rerefined model

HIV-1 gp120 Envelope Glycoprotein (I109C, T257S, S334A, S375W, Q428C) Complexed with CD4 and Antibody 17b

Program
PHENIX 2.0_5824
Model type
Multiconformer
Purpose
Refinement
Atoms
8,170
Residues
923
Protein chains
4
Alternate-location fraction
0%
Ligands
FRU, GLC, NAG

Evaluations

R-work
0.179
R-free
0.227
Clashscore
6.4

Macromolecules

The same in every model of this entry.

Entity 1
MoleculeChainsLengthOrganismUniProtDetails
ENVELOPE GLYCOPROTEIN GP120317
  • Human immunodeficiency virus 111676
  • ConstructCORE
  • MutationsI109C T257S S334A S375W Q428C
Entity 2
MoleculeChainsLengthOrganismUniProtDetails
T-cell surface glycoprotein CD4184
  • ConstructD1D2, N-TERMINAL TWO DOMAIN FRAGMENT
Entity 3
MoleculeChainsLengthOrganismUniProtDetails
ANTIBODY 17B, LIGHT CHAIN214
  • ConstructANTIGEN-BINDING FRAGMENT, FAB
Entity 4
MoleculeChainsLengthOrganismUniProtDetails
ANTIBODY 17B, HEAVY CHAIN229
  • ConstructANTIGEN-BINDING FRAGMENT, FAB

Data

L0 Raw
L1 Processed
L2 Models
L3 Evaluations