Ensemble refinement model

PDB 6BAH|dpdb_l5eb4tto

Ensemble refinement model

Trastuzumab Fab v3 with 5-diphenyl meditope variant

Program: PHENIX phenix.ensemble_refinement
Model type: Ensemble
Purpose: Refinement
Atoms: 469,331

Residues: 565
Protein chains: 5
Alternate-location fraction: 0%
Ligands: 2GX, ACE

Evaluations

R-work

0.162

R-free

0.201

Clashscore

—

Macromolecules

The same in every model of this entry.

Entity 1
Molecule	Chains	Length	Organism	UniProt	Details
Trastuzumab Fab light chain,Immunoglobulin kappa constant		214	Homo sapiens9606 Mus musculus10090	P01834SIFTS · 2026_03	—

Entity 2
Molecule	Chains	Length	Organism	UniProt	Details
Trastuzumab Fab heavy chain,IGH@ protein		223	Homo sapiens9606 Mus musculus10090	Q6GMX6SIFTS · 2026_03	—

Entity 3
Molecule	Chains	Length	Organism	UniProt	Details
Protein L		64	Finegoldia magna1260	Q51918SIFTS · 2026_03	—

Entity 4
Molecule	Chains	Length	Organism	UniProt	Details
Immunoglobulin G binding protein A		54	Staphylococcus aureus1280	P02976SIFTS · 2026_03	—

Entity 5
Molecule	Chains	Length	Organism	UniProt	Details
meditope		13	synthetic construct32630	—	—

Data

L0 Raw

L1 Processed

L2 Models

L3 Evaluations