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Rerefined model

PDB 8CMH|dpdb_nnrg3igr

Rerefined model

Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Omicron (BA.1) Spike peptide S486-505

Program
PHENIX 2.0_5824
Model type
Multiconformer
Purpose
Refinement
Atoms
3,852
Residues
388
Protein chains
3
Alternate-location fraction
2.32%
Ligands
DHL, EDO, SO4

Evaluations

R-work
0.177
R-free
0.214
Clashscore
5.7

Macromolecules

The same in every model of this entry.

Entity 1
MoleculeChainsLengthOrganismUniProtDetails
HLA class II histocompatibility antigen, DR alpha chain183—
Entity 2
MoleculeChainsLengthOrganismUniProtDetails
Human leukocyte antigen DR beta chain allotype DR1 (DRB1*0101)194—
Entity 3
MoleculeChainsLengthOrganismUniProtDetails
Spike protein S2'20
  • Severe acute respiratory syndrome coronavirus 22697049
—

Data

L0 Raw
L1 Processed
L2 Models
L3 Evaluations