Ensemble refinement model

PDB 5M01|dpdb_pp8d5dug

Ensemble refinement model

Crystal structure of murine P14 TCR/ H-2Db complex with PA, modified gp33 peptide from LCMV

Program: PHENIX phenix.ensemble_refinement
Model type: Ensemble
Purpose: Refinement
Atoms: 464,903

Residues: 811
Protein chains: 5
Alternate-location fraction: 0%
Ligand: GOL

Evaluations

R-work

0.177

R-free

0.221

Clashscore

—

Macromolecules

The same in every model of this entry.

Entity 1
Molecule	Chains	Length	Organism	UniProt	Details
H-2 class I histocompatibility antigen, D-B alpha chain		276	Mus musculus10090	P01899Depositor	—

Entity 2
Molecule	Chains	Length	Organism	UniProt	Details
Beta-2-microglobulin		119	Mus musculus10090	P01887Depositor	—

Entity 3
Molecule	Chains	Length	Organism	UniProt	Details
Protein Trav14-1,T-cell receptor alpha chain C region		205	Mus musculus10090 Mus musculus10090	A0A0G2JF94Depositor P01849Depositor	—

Entity 4
Molecule	Chains	Length	Organism	UniProt	Details
T-cell receptor beta chain V region C5,T-cell receptor beta-2 chain C region		238	Mus musculus10090 Mus musculus10090	P01851Depositor P04213Depositor	—

Entity 5
Molecule	Chains	Length	Organism	UniProt	Details
LCMV-DERIVED GP33 ALTERED PEPTIDE LIGAND PA		9	Mammarenavirus choriomeningitidis3052303	—	—

Data

L0 Raw

L1 Processed

L2 Models

L3 Evaluations