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qFit model

PDB 5L9V|dpdb_qztpv5yp

qFit model

HIF prolyl hydroxylase 2 (PHD2-R281C/P317C) cross-linked to HIF-1alpha NODD-L397C/D412C and N-oxalylglycine (NOG) (complex-1)

Program
Phenix 2.0_5824
Model type
Multiconformer
Purpose
Model Building
Atoms
9,590
Residues
468
Protein chains
4
Alternate-location fraction
93.16%
Ligands
MN, OGA

Evaluations

R-work
0.182
R-free
0.237
Clashscore
—

Macromolecules

The same in every model of this entry.

Entity 1
MoleculeChainsLengthOrganismUniProtDetails
Egl nine homolog 1252
  • ConstructCatalytic domain, UNP RESIDUES 181-426
  • MutationsC201A R281C P317C R398A
Entity 2
MoleculeChainsLengthOrganismUniProtDetails
Hypoxia-inducible factor 1-alpha19
  • ConstructN-TERMINAL OXYGEN DEPENDENT DEGRADATION DOMAIN (NODD), UNP RESIDUES 395-413
  • MutationsL397C D412C

Data

L0 Raw
L1 Processed
L2 Models
L3 Evaluations