Ensemble refinement model

PDB 8DGU|dpdb_utw26677

Ensemble refinement model

Crystal structure of SARS-CoV-2 spike stem helix peptide in complex with Fab of broadly neutralizing antibody CC25.106 isolated from a vaccinated COVID-19 convalescent

Program: PHENIX 1.21.2_5419
Model type: Ensemble
Purpose: Refinement
Atoms: 236,378

Residues: 445
Protein chains: 3
Alternate-location fraction: 0%
Ligand: GOL

Evaluations

R-work

0.163

R-free

0.215

Clashscore

—

Macromolecules

The same in every model of this entry.

Entity 1
Molecule	Chains	Length	Organism	UniProt	Details
Spike protein S2'		25	Severe acute respiratory syndrome coronavirus 22697049	P0DTC2SIFTS · 2026_03	ConstructStem helix peptide, residues 1140-1164

Entity 2
Molecule	Chains	Length	Organism	UniProt	Details
Antibody CC25.106 Fab heavy chain		220	Homo sapiens9606	—	—

Entity 3
Molecule	Chains	Length	Organism	UniProt	Details
Antibody CC25.106 Fab light chain		216	Homo sapiens9606	—	—

Data

L0 Raw

L1 Processed

L2 Models

L3 Evaluations