Ensemble refinement model

PDB 6Y9H|dpdb_uz3ygwvp

Ensemble refinement model

Thrombin in complex with D-Phe-Pro-m-Trifluoromethylbenzylamide derivative (phe2)

Program
PHENIX 1.21.2_5419
Model type
Ensemble
Purpose
Refinement
Atoms
130,763
Residues
289
Protein chains
4
Alternate-location fraction
0%
Ligands
DMS, DPN, NA, NAG, OGZ, PO4, TYS

Evaluations

R-work
0.179
R-free
0.212
Clashscore
—

Macromolecules

The same in every model of this entry.

Entity 1
MoleculeChainsLengthOrganismUniProtDetails
Prothrombin36—
Entity 2
MoleculeChainsLengthOrganismUniProtDetails
Prothrombin259—
Entity 3
MoleculeChainsLengthOrganismUniProtDetails
Hirudin variant-212
  • Hirudo medicinalis6421
—
Entity 4
MoleculeChainsLengthOrganismUniProtDetails
D-Phe-Pro-m-Trifluoromethylbenzylamide derivative (phe2)3——

Data

L0 Raw
L1 Processed
L2 Models
L3 Evaluations