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Ensemble refinement model

PDB 4Y1D|dpdb_v78b0cfa

Ensemble refinement model

Cyclic hexapeptide cyc[NdPopPKID] in complex with HIV-1 integrase core domain

Program
PHENIX phenix.ensemble_refinement
Model type
Ensemble
Purpose
Refinement
Atoms
116,516
Residues
286
Protein chains
3
Alternate-location fraction
0%
Ligands
45W, CD, CL, DVA, NLE, SO4

Evaluations

R-work
0.191
R-free
0.235
Clashscore
—

Macromolecules

The same in every model of this entry.

Entity 1
MoleculeChainsLengthOrganismUniProtDetails
Integrase167
  • Human immunodeficiency virus 111676
  • Constructresidues 50-212
  • MutationsC56S W131D F139D F185H
Entity 2
MoleculeChainsLengthOrganismUniProtDetails
Cyclic hexapeptide cyc[NdPopPKID]6——

Data

L0 Raw
L1 Processed
L2 Models
L3 Evaluations