Ensemble refinement model

PDB 7NBB|dpdb_erpjpi8l

Ensemble refinement model

Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with synthetic nanobody NbSL3

Program
PHENIX 1.21.2_5419
Model type
Ensemble
Purpose
Refinement
Atoms
385,748
Residues
683
Protein chains
8
Alternate-location fraction
0%
Ligands
CL, GOL, MG, NA

Evaluations

R-work
0.175
R-free
0.214
Clashscore
—

Macromolecules

The same in every model of this entry.

Entity 1
MoleculeChainsLengthOrganismUniProtDetails
Polyubiquitin-B72—
Entity 2
MoleculeChainsLengthOrganismUniProtDetails
Polyubiquitin-B76
  • MutationsK48R K63R
Entity 3
MoleculeChainsLengthOrganismUniProtDetails
Synthetic nanobody NbSL3129——

Data

L0 Raw
L1 Processed
L2 Models
L3 Evaluations