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Deposited model

PDB 2NY1|dpdb_guaq05qh

Deposited model

HIV-1 gp120 Envelope Glycoprotein (I109C, T257S, S334A, S375W, Q428C) Complexed with CD4 and Antibody 17b

Program
REFMAC 5.2.0005
Model type
Deposited
Purpose
Reference
Authors
Zhou, T., Xu, L., Dey, B., Hessell, A.J., Van Ryk, D., Xiang, S.H., Yang, X., Zhang, M.Y., Zwick, M.B., Arthos, J., Burton, D.R., Dimitrov, D.S., Sodroski, J., Wyatt, R., Nabel, G.J., Kwong, P.D.
Atoms
7,852
Residues
923
Protein chains
4
Unmodeled fraction
2.22%
Ligand
NAG

Evaluations

R-work
0.209
R-free
0.250
Clashscore
9.1

Macromolecules

The same in every model of this entry.

Entity 1
MoleculeChainsLengthOrganismUniProtDetails
ENVELOPE GLYCOPROTEIN GP120317
  • Human immunodeficiency virus 111676
  • ConstructCORE
  • MutationsI109C T257S S334A S375W Q428C
Entity 2
MoleculeChainsLengthOrganismUniProtDetails
T-cell surface glycoprotein CD4184
  • ConstructD1D2, N-TERMINAL TWO DOMAIN FRAGMENT
Entity 3
MoleculeChainsLengthOrganismUniProtDetails
ANTIBODY 17B, LIGHT CHAIN214
  • ConstructANTIGEN-BINDING FRAGMENT, FAB
Entity 4
MoleculeChainsLengthOrganismUniProtDetails
ANTIBODY 17B, HEAVY CHAIN229
  • ConstructANTIGEN-BINDING FRAGMENT, FAB

Data

L0 Raw
L1 Processed
L2 Models
L3 Evaluations