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Deposited model

PDB 3VRV|dpdb_u4eswbdp

Deposited model

VDR ligand binding domain in complex with 2-Methylidene-26,27-dimethyl-19,24-dinor-1alpha,25-dihydroxyvitamin D3

Program
REFMAC
Model type
Deposited
Purpose
Reference
Authors
Yoshimoto, N., Inaba, Y., Itoh, T., Nakabayashi, M., Ito, N., Yamamoto, K.
Atoms
2,112
Residues
247
Protein chains
2
Unmodeled fraction
13.03%

Evaluations

R-work
0.209
R-free
0.248
Clashscore
6.5

Macromolecules

The same in every model of this entry.

Entity 1
MoleculeChainsLengthOrganismUniProtDetails
Vitamin D3 receptor271
  • ConstructLigand binding domain, residues 116-423
  • Mutationsdeletion mutant, residues 165-211
Entity 2
MoleculeChainsLengthOrganismUniProtDetails
13-meric peptide from Mediator of RNA polymerase II transcription subunit 113
  • ConstructDRIP205 NR2 BOX peptide, UNP residues 640-652

Data

L0 Raw
L1 Processed
L2 Models
L3 Evaluations