Dynamic PDB
Log in

Rerefined model

PDB 5AF9|dpdb_wtxbsp3i

Rerefined model

Thrombin in complex with 4-Methoxy-N-(2-pyridinyl)benzamide

Program
PHENIX 2.0_5824
Model type
Multiconformer
Purpose
Refinement
Atoms
2,852
Residues
288
Protein chains
3
Alternate-location fraction
4.86%
Ligands
DMS, EDO, GOL, NA, NAG, PO4, SJR, TYS

Evaluations

R-work
0.178
R-free
0.193
Clashscore
3.4

Macromolecules

The same in every model of this entry.

Entity 1
MoleculeChainsLengthOrganismUniProtDetails
THROMBIN HEAVY CHAIN258
  • ConstructTHROMBIN HEAVY CHAIN, UNP RESIDUES 364-621
Entity 2
MoleculeChainsLengthOrganismUniProtDetails
HIRUDIN VARIANT-212
  • Hirudo medicinalis6421
  • ConstructUNP RESIDUES 61-72
Entity 3
MoleculeChainsLengthOrganismUniProtDetails
THROMBIN LIGHT CHAIN29
  • ConstructTHROMBIN LIGHT CHAIN, UNP RESIDUES 333-361

Data

L0 Raw
L1 Processed
L2 Models
L3 Evaluations