Deposited model

PDB 6HBY|dpdb_b1521873

Deposited model

HLA class II peptide flanking residues tune the immunogenicity of a human tumor-derived epitope

Program: REFMAC 5.8.0135
Model type: Deposited
Purpose: Reference
Authors: MacLachlan, B., Rizkallah, P.J., Sewell, A.K., Cole, D.K., Godkin, A.J.

Atoms: 6,784
Residues: 777
Protein chains: 6
Unmodeled fraction: 0.13%

Evaluations

R-work

0.193

R-free

0.241

Clashscore

2.5

Macromolecules

The same in every model of this entry.

Entity 1
Molecule	Chains	Length	Organism	UniProt	Details
HLA class II histocompatibility antigen, DR alpha chain		178	Homo sapiens9606	P01903SIFTS · 2026_03	—

Entity 2
Molecule	Chains	Length	Organism	UniProt	Details
HLA class II histocompatibility antigen, DRB1-1 beta chain		191	Homo sapiens9606	P01911SIFTS · 2026_03	—

Entity 3
Molecule	Chains	Length	Organism	UniProt	Details
ARRPPLAELAALNLSGSRL 5T4 tumour epitope		19	Homo sapiens9606	Q13641SIFTS · 2026_03	—

Entity 4
Molecule	Chains	Length	Organism	UniProt	Details
HLA class II histocompatibility antigen, DR alpha chain		180	Homo sapiens9606	P01903SIFTS · 2026_03	—

Data

L0 Raw

L1 Processed

L2 Models

L3 Evaluations